In brief, there are command line tools available via Bio-Formats to properly inspect and validate the XML in an OME-TIFF file.īoth the tiffcomment and xmlvalid commands are used tiffcomment extracts the XML from the file and xmlvalid validates the XML and prints any errors to the console. So check out their resources for more detailed information. Using the Command Lineīio-Formats has a whole host of information regarding extracting, processing, and validating OME-XML. What if I cannot read my metadata via a GUI?!ĭid you observe a problem with your metadata via a GUI? Was there no data at all? Or was metadata missing? If this is the case, then perhaps there are structural issues with your metadata that require a bit more in-depth inspection via command line tools. one per tile if multi-scan image)? Are the dimensions correct? etc. These tools allow you to quickly check if your metadata ‘looks’ correct… are there the correct number of image blocks (i.e. OMEVisual is another tool that can visualize OME metadata it is a Fiji plugin.
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